Text-mining assisted regulatory annotation
Identifieur interne : 001271 ( Main/Exploration ); précédent : 001270; suivant : 001272Text-mining assisted regulatory annotation
Auteurs : Stein Aerts [Belgique] ; Maximilian Haeussler [France] ; Steven Van Vooren [Belgique] ; Obi L. Griffith [Canada] ; Paco Hulpiau [Belgique] ; Steven Jm Jones [Canada] ; Stephen B. Montgomery [Royaume-Uni] ; Casey M. Bergman [Royaume-Uni]Source :
- Genome Biology [ 1465-6906 ] ; 2008.
Abstract
Text-mining technologies can be integrated with genome annotation systems, increasing the availability of annotated
Url:
DOI: 10.1186/gb-2008-9-2-r31
PubMed: 18271954
PubMed Central: 2374703
Affiliations:
- Belgique, Canada, France, Royaume-Uni
- Angleterre, Grand Manchester
- Manchester
- Université de Manchester
Links toward previous steps (curation, corpus...)
- to stream Pmc, to step Corpus: 000239
- to stream Pmc, to step Curation: 000239
- to stream Pmc, to step Checkpoint: 000417
- to stream Ncbi, to step Merge: 000033
- to stream Ncbi, to step Curation: 000033
- to stream Ncbi, to step Checkpoint: 000033
- to stream Main, to step Merge: 001274
- to stream Main, to step Curation: 001271
Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Text-mining assisted regulatory annotation</title><author><name sortKey="Aerts, Stein" sort="Aerts, Stein" uniqKey="Aerts S" first="Stein" last="Aerts">Stein Aerts</name><affiliation wicri:level="1"><nlm:aff id="I1">Laboratory of Neurogenetics, Department of Molecular and Developmental Genetics, VIB, Leuven, B-3000, Belgium</nlm:aff><country xml:lang="fr">Belgique</country><wicri:regionArea>Laboratory of Neurogenetics, Department of Molecular and Developmental Genetics, VIB, Leuven, B-3000</wicri:regionArea><wicri:noRegion>B-3000</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="I2">Department of Human Genetics, Katholieke Universiteit Leuven School of Medicine, Herestraat, Leuven, B-3000, Belgium</nlm:aff><country xml:lang="fr">Belgique</country><wicri:regionArea>Department of Human Genetics, Katholieke Universiteit Leuven School of Medicine, Herestraat, Leuven, B-3000</wicri:regionArea><wicri:noRegion>B-3000</wicri:noRegion></affiliation></author><author><name sortKey="Haeussler, Maximilian" sort="Haeussler, Maximilian" uniqKey="Haeussler M" first="Maximilian" last="Haeussler">Maximilian Haeussler</name><affiliation wicri:level="1"><nlm:aff id="I3">Institut de Neurosciences A Fessard, Centre National de la Rechere Scientifique, Gif-sur-Yvette, 91 198, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Institut de Neurosciences A Fessard, Centre National de la Rechere Scientifique, Gif-sur-Yvette, 91 198</wicri:regionArea><wicri:noRegion>91 198</wicri:noRegion><wicri:noRegion>91 198</wicri:noRegion></affiliation></author><author><name sortKey="Van Vooren, Steven" sort="Van Vooren, Steven" uniqKey="Van Vooren S" first="Steven" last="Van Vooren">Steven Van Vooren</name><affiliation wicri:level="1"><nlm:aff id="I4">Department of Electrical Engineering, Katholieke Universiteit Leuven, Heverlee, B-3001, Belgium</nlm:aff><country xml:lang="fr">Belgique</country><wicri:regionArea>Department of Electrical Engineering, Katholieke Universiteit Leuven, Heverlee, B-3001</wicri:regionArea><wicri:noRegion>B-3001</wicri:noRegion></affiliation></author><author><name sortKey="Griffith, Obi L" sort="Griffith, Obi L" uniqKey="Griffith O" first="Obi L" last="Griffith">Obi L. Griffith</name><affiliation wicri:level="1"><nlm:aff id="I5">Canada's Michael Smith Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, V5Z 4E6, Canada</nlm:aff><country xml:lang="fr">Canada</country><wicri:regionArea>Canada's Michael Smith Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, V5Z 4E6</wicri:regionArea><wicri:noRegion>V5Z 4E6</wicri:noRegion></affiliation></author><author><name sortKey="Hulpiau, Paco" sort="Hulpiau, Paco" uniqKey="Hulpiau P" first="Paco" last="Hulpiau">Paco Hulpiau</name><affiliation wicri:level="1"><nlm:aff id="I6">VIB Department for Molecular Biomedical Research, Ghent University, Ghent, 9052, Belgium</nlm:aff><country xml:lang="fr">Belgique</country><wicri:regionArea>VIB Department for Molecular Biomedical Research, Ghent University, Ghent, 9052</wicri:regionArea><wicri:noRegion>9052</wicri:noRegion></affiliation></author><author><name sortKey="Jones, Steven Jm" sort="Jones, Steven Jm" uniqKey="Jones S" first="Steven Jm" last="Jones">Steven Jm Jones</name><affiliation wicri:level="1"><nlm:aff id="I5">Canada's Michael Smith Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, V5Z 4E6, Canada</nlm:aff><country xml:lang="fr">Canada</country><wicri:regionArea>Canada's Michael Smith Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, V5Z 4E6</wicri:regionArea><wicri:noRegion>V5Z 4E6</wicri:noRegion></affiliation></author><author><name sortKey="Montgomery, Stephen B" sort="Montgomery, Stephen B" uniqKey="Montgomery S" first="Stephen B" last="Montgomery">Stephen B. Montgomery</name><affiliation wicri:level="1"><nlm:aff id="I7">Wellcome Trust Sanger Institute, Hinxton, CB10 1SA, UK</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Wellcome Trust Sanger Institute, Hinxton, CB10 1SA</wicri:regionArea><wicri:noRegion>CB10 1SA</wicri:noRegion></affiliation></author><author><name sortKey="Bergman, Casey M" sort="Bergman, Casey M" uniqKey="Bergman C" first="Casey M" last="Bergman">Casey M. Bergman</name><affiliation wicri:level="4"><nlm:aff id="I8">Faculty of Life Sciences, University of Manchester, Oxford Road, Manchester, M13 9PT, UK</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Faculty of Life Sciences, University of Manchester, Oxford Road, Manchester, M13 9PT</wicri:regionArea><orgName type="university">Université de Manchester</orgName><placeName><settlement type="city">Manchester</settlement><region type="nation">Angleterre</region><region nuts="2" type="region">Grand Manchester</region></placeName></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">18271954</idno><idno type="pmc">2374703</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2374703</idno><idno type="RBID">PMC:2374703</idno><idno type="doi">10.1186/gb-2008-9-2-r31</idno><date when="2008">2008</date><idno type="wicri:Area/Pmc/Corpus">000239</idno><idno type="wicri:Area/Pmc/Curation">000239</idno><idno type="wicri:Area/Pmc/Checkpoint">000417</idno><idno type="wicri:Area/Ncbi/Merge">000033</idno><idno type="wicri:Area/Ncbi/Curation">000033</idno><idno type="wicri:Area/Ncbi/Checkpoint">000033</idno><idno type="wicri:doubleKey">1465-6906:2008:Aerts S:text:mining:assisted</idno><idno type="wicri:Area/Main/Merge">001274</idno><idno type="wicri:Area/Main/Curation">001271</idno><idno type="wicri:Area/Main/Exploration">001271</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Text-mining assisted regulatory annotation</title><author><name sortKey="Aerts, Stein" sort="Aerts, Stein" uniqKey="Aerts S" first="Stein" last="Aerts">Stein Aerts</name><affiliation wicri:level="1"><nlm:aff id="I1">Laboratory of Neurogenetics, Department of Molecular and Developmental Genetics, VIB, Leuven, B-3000, Belgium</nlm:aff><country xml:lang="fr">Belgique</country><wicri:regionArea>Laboratory of Neurogenetics, Department of Molecular and Developmental Genetics, VIB, Leuven, B-3000</wicri:regionArea><wicri:noRegion>B-3000</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="I2">Department of Human Genetics, Katholieke Universiteit Leuven School of Medicine, Herestraat, Leuven, B-3000, Belgium</nlm:aff><country xml:lang="fr">Belgique</country><wicri:regionArea>Department of Human Genetics, Katholieke Universiteit Leuven School of Medicine, Herestraat, Leuven, B-3000</wicri:regionArea><wicri:noRegion>B-3000</wicri:noRegion></affiliation></author><author><name sortKey="Haeussler, Maximilian" sort="Haeussler, Maximilian" uniqKey="Haeussler M" first="Maximilian" last="Haeussler">Maximilian Haeussler</name><affiliation wicri:level="1"><nlm:aff id="I3">Institut de Neurosciences A Fessard, Centre National de la Rechere Scientifique, Gif-sur-Yvette, 91 198, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Institut de Neurosciences A Fessard, Centre National de la Rechere Scientifique, Gif-sur-Yvette, 91 198</wicri:regionArea><wicri:noRegion>91 198</wicri:noRegion><wicri:noRegion>91 198</wicri:noRegion></affiliation></author><author><name sortKey="Van Vooren, Steven" sort="Van Vooren, Steven" uniqKey="Van Vooren S" first="Steven" last="Van Vooren">Steven Van Vooren</name><affiliation wicri:level="1"><nlm:aff id="I4">Department of Electrical Engineering, Katholieke Universiteit Leuven, Heverlee, B-3001, Belgium</nlm:aff><country xml:lang="fr">Belgique</country><wicri:regionArea>Department of Electrical Engineering, Katholieke Universiteit Leuven, Heverlee, B-3001</wicri:regionArea><wicri:noRegion>B-3001</wicri:noRegion></affiliation></author><author><name sortKey="Griffith, Obi L" sort="Griffith, Obi L" uniqKey="Griffith O" first="Obi L" last="Griffith">Obi L. Griffith</name><affiliation wicri:level="1"><nlm:aff id="I5">Canada's Michael Smith Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, V5Z 4E6, Canada</nlm:aff><country xml:lang="fr">Canada</country><wicri:regionArea>Canada's Michael Smith Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, V5Z 4E6</wicri:regionArea><wicri:noRegion>V5Z 4E6</wicri:noRegion></affiliation></author><author><name sortKey="Hulpiau, Paco" sort="Hulpiau, Paco" uniqKey="Hulpiau P" first="Paco" last="Hulpiau">Paco Hulpiau</name><affiliation wicri:level="1"><nlm:aff id="I6">VIB Department for Molecular Biomedical Research, Ghent University, Ghent, 9052, Belgium</nlm:aff><country xml:lang="fr">Belgique</country><wicri:regionArea>VIB Department for Molecular Biomedical Research, Ghent University, Ghent, 9052</wicri:regionArea><wicri:noRegion>9052</wicri:noRegion></affiliation></author><author><name sortKey="Jones, Steven Jm" sort="Jones, Steven Jm" uniqKey="Jones S" first="Steven Jm" last="Jones">Steven Jm Jones</name><affiliation wicri:level="1"><nlm:aff id="I5">Canada's Michael Smith Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, V5Z 4E6, Canada</nlm:aff><country xml:lang="fr">Canada</country><wicri:regionArea>Canada's Michael Smith Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, V5Z 4E6</wicri:regionArea><wicri:noRegion>V5Z 4E6</wicri:noRegion></affiliation></author><author><name sortKey="Montgomery, Stephen B" sort="Montgomery, Stephen B" uniqKey="Montgomery S" first="Stephen B" last="Montgomery">Stephen B. Montgomery</name><affiliation wicri:level="1"><nlm:aff id="I7">Wellcome Trust Sanger Institute, Hinxton, CB10 1SA, UK</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Wellcome Trust Sanger Institute, Hinxton, CB10 1SA</wicri:regionArea><wicri:noRegion>CB10 1SA</wicri:noRegion></affiliation></author><author><name sortKey="Bergman, Casey M" sort="Bergman, Casey M" uniqKey="Bergman C" first="Casey M" last="Bergman">Casey M. Bergman</name><affiliation wicri:level="4"><nlm:aff id="I8">Faculty of Life Sciences, University of Manchester, Oxford Road, Manchester, M13 9PT, UK</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Faculty of Life Sciences, University of Manchester, Oxford Road, Manchester, M13 9PT</wicri:regionArea><orgName type="university">Université de Manchester</orgName><placeName><settlement type="city">Manchester</settlement><region type="nation">Angleterre</region><region nuts="2" type="region">Grand Manchester</region></placeName></affiliation></author></analytic><series><title level="j">Genome Biology</title><idno type="ISSN">1465-6906</idno><idno type="eISSN">1465-6914</idno><imprint><date when="2008">2008</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>Text-mining technologies can be integrated with genome annotation systems, increasing the availability of annotated <italic>cis</italic>-regulatory data.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>Belgique</li><li>Canada</li><li>France</li><li>Royaume-Uni</li></country><region><li>Angleterre</li><li>Grand Manchester</li></region><settlement><li>Manchester</li></settlement><orgName><li>Université de Manchester</li></orgName></list><tree><country name="Belgique"><noRegion><name sortKey="Aerts, Stein" sort="Aerts, Stein" uniqKey="Aerts S" first="Stein" last="Aerts">Stein Aerts</name></noRegion><name sortKey="Aerts, Stein" sort="Aerts, Stein" uniqKey="Aerts S" first="Stein" last="Aerts">Stein Aerts</name><name sortKey="Hulpiau, Paco" sort="Hulpiau, Paco" uniqKey="Hulpiau P" first="Paco" last="Hulpiau">Paco Hulpiau</name><name sortKey="Van Vooren, Steven" sort="Van Vooren, Steven" uniqKey="Van Vooren S" first="Steven" last="Van Vooren">Steven Van Vooren</name></country><country name="France"><noRegion><name sortKey="Haeussler, Maximilian" sort="Haeussler, Maximilian" uniqKey="Haeussler M" first="Maximilian" last="Haeussler">Maximilian Haeussler</name></noRegion></country><country name="Canada"><noRegion><name sortKey="Griffith, Obi L" sort="Griffith, Obi L" uniqKey="Griffith O" first="Obi L" last="Griffith">Obi L. Griffith</name></noRegion><name sortKey="Jones, Steven Jm" sort="Jones, Steven Jm" uniqKey="Jones S" first="Steven Jm" last="Jones">Steven Jm Jones</name></country><country name="Royaume-Uni"><noRegion><name sortKey="Montgomery, Stephen B" sort="Montgomery, Stephen B" uniqKey="Montgomery S" first="Stephen B" last="Montgomery">Stephen B. Montgomery</name></noRegion><name sortKey="Bergman, Casey M" sort="Bergman, Casey M" uniqKey="Bergman C" first="Casey M" last="Bergman">Casey M. Bergman</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Wicri/Belgique/explor/OpenAccessBelV2/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 001271 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 001271 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Wicri/Belgique
|area= OpenAccessBelV2
|flux= Main
|étape= Exploration
|type= RBID
|clé= PMC:2374703
|texte= Text-mining assisted regulatory annotation
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i -Sk "pubmed:18271954" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd \
| NlmPubMed2Wicri -a OpenAccessBelV2
| This area was generated with Dilib version V0.6.25. |  |